mock-env-aligned

Oligotype AT in "mock-env-aligned"

Page that explains diversity within an oligotype.

Unique Sequences Curve

» Abundance curve of unique sequences within AT, along with entropy values associated with these new set of alignments.

Distribution Among Samples

» Graphs below aim to give an idea about the distribution of unique sequences within AT among all samples.

This graph is here to remind the total number of reads for each sample that underwent the oligotyping analysis:

This graph shows the actual counts and distribution of unique sequences concealed within AT. By hovering over dots on the graph you can see the distribution of the first 20 sequences. If there are cases where the number of unique read #1 is competing with the number of other unique reads, it would mean that there is too much diversity trapped in this oligotype and needs to be decomposed by increasing the number of components. Sequences section below might help you decide which components might be appropriate to include.

This graph is similar to the one above, but normalized per sample by percent. Again, this should give you an idea about the concealed diversity.

Sequences

» First 20 Unique sequences

b GC ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||

750 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

15 AT b GT-TG--AAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

13 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATTAAAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

10 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAACTTTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

7 AT b GT-TGAAAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

7 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC--TTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

6 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGATA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

6 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT--AAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

5 AT b GT-TG-AAAAA-GTT-AGCG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

4 AT b GT-TG-AAAAA-GTT-AGTG-GTG--AAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

4 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAACACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

4 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-ATGGGGTAGCG-AAG-AGGA

4 AT b GT-TG-AAAAA-GCT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

4 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AC-GGGTAGCG-AAG-AGGA

4 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G--AA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

3 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-GG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

3 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-GCG-AAAGC-AT-GGGTAGCG-AAG-AGGA

3 AT b GT-TG-AAAAA-GTT-AGTG-GTGAAAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

3 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTTAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ACTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

3 AT b GT-TG-AAAAA-GTT-AGTG-GTG-AAAT-CCCAGA-GCTCAA-CT-CTGGAAC-TG-CCATT-AAAAC-TTTTCAG-CTA-GAGTAT-G-ATAGAGG-AAAGCAGAA-TTTCTAGT-G-TAGA-G-GTG-AAAT-TCG-T-AG-A-TATTA-G-AAA-GAATACCA-ATTG-CGA-AGGCAGC-TTTCT-GGATCATTACTGACA-C-TGAGGA-ACG-AAAGC-AT-GGGTAGCG-AAG-AGGA

BLAST Hits

» Alignments obtained for the most frequent sequence of AT are shown below.

Uncultured marine bacterium clone J12-B9 16S ribosomal RNA gene, partial sequence
Accession: KF185808
Identity : 100.0%
Coverage : 100.0%

QUERY: GTTGAAAAAGTTAGTGGTGAAATCCCAGAGCTTAACTCTGGAACTGCCATTAAAACTTTTCAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCAATTGCGAAGGCAGCTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAGAGGA
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: GTTGAAAAAGTTAGTGGTGAAATCCCAGAGCTTAACTCTGGAACTGCCATTAAAACTTTTCAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCAATTGCGAAGGCAGCTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAGAGGA

Uncultured marine bacterium clone J3-H4 16S ribosomal RNA gene, partial sequence
Accession: KF185324
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone A0_93 16S ribosomal RNA gene, partial sequence
Accession: JQ731974
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone MWL-71 16S ribosomal RNA gene, partial sequence
Accession: KF036062
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone S72_020 16S ribosomal RNA gene, partial sequence
Accession: KC874267
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone S67_046 16S ribosomal RNA gene, partial sequence
Accession: KC873921
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone S67_017 16S ribosomal RNA gene, partial sequence
Accession: KC873892
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone S51_060 16S ribosomal RNA gene, partial sequence
Accession: KC873314
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone S31_024 16S ribosomal RNA gene, partial sequence
Accession: KC872878
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone S30_062 16S ribosomal RNA gene, partial sequence
Accession: KC872835
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone S30_054 16S ribosomal RNA gene, partial sequence
Accession: KC872829
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone S30_033 16S ribosomal RNA gene, partial sequence
Accession: KC872815
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone S11_091 16S ribosomal RNA gene, partial sequence
Accession: KC872114
Identity : 100.0%
Coverage : 100.0%

Uncultured SAR11 cluster alpha proteobacterium clone BFB663 16S ribosomal RNA gene, partial sequence
Accession: KC545752
Identity : 100.0%
Coverage : 100.0%

Uncultured alpha proteobacterium clone M3N41 16S ribosomal RNA gene, partial sequence
Accession: KC006282
Identity : 100.0%
Coverage : 100.0%

Uncultured alpha proteobacterium clone M3N38 16S ribosomal RNA gene, partial sequence
Accession: KC006280
Identity : 100.0%
Coverage : 100.0%

Uncultured alpha proteobacterium clone M3N12 16S ribosomal RNA gene, partial sequence
Accession: KC006255
Identity : 100.0%
Coverage : 100.0%

Uncultured Rhizobiales bacterium clone D3N97 16S ribosomal RNA gene, partial sequence
Accession: KC006150
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone B_NY_3H06 16S ribosomal RNA gene, partial sequence
Accession: JN833159
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone B_NY_3H01 16S ribosomal RNA gene, partial sequence
Accession: JN833126
Identity : 100.0%
Coverage : 100.0%