» Abundance curve of unique sequences within TT, along with entropy values associated with these new set of alignments.
» Graphs below aim to give an idea about the distribution of unique sequences within TT among all samples.
This graph is here to remind the total number of reads for each sample that underwent the oligotyping analysis:
This graph shows the actual counts and distribution of unique sequences concealed within TT. By hovering over dots on the graph you can see the distribution of the first 20 sequences. If there are cases where the number of unique read #1 is competing with the number of other unique reads, it would mean that there is too much diversity trapped in this oligotype and needs to be decomposed by increasing the number of components. Sequences section below might help you decide which components might be appropriate to include.
This graph is similar to the one above, but normalized per sample by percent. Again, this should give you an idea about the concealed diversity.
» First 20 Unique sequences
b CA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
160323 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
1006 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCCACCGTAAAATTGC
395 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAGGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
382 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAGAGTTTGCGGCTCAACCGTAAAATTGC
382 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCGGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
362 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGGGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
354 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAGGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
349 TT b TACGGAGGATTCGAGCGTTATCCGGGTTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
327 TT b TACGGGGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
321 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGGAAGTTTGCGGCTCAACCGTAAAATTGC
302 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAGAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
298 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAGATTGC
293 TT b TACAGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
290 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCCCAACCGTAAAATTGC
290 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAGTTGC
288 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGCGAAAGTTTGCGGCTCAACCGTAAAATTGC
283 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTGGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
281 TT b TACGGAGGATTCGAGCGTTGTCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
279 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTCGCGGCTCAACCGTAAAATTGC
277 TT b TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGCTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
» Alignments obtained for the most frequent sequence of TT are shown below.
Uncultured organism clone ELU0124-T310-S-NI_000426 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ791645
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0124-T310-S-NI_000300 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ791519
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0124-T310-S-NI_000085 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ791304
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0114-T283-S-NI_000242 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788859
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0114-T283-S-NI_000137 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788754
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0114-T283-S-NI_000136 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788753
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0114-T283-S-NI_000109 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788726
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0114-T283-S-NI_000005 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788622
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0113-T282-S-NI_000275 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788617
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0113-T282-S-NI_000150 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788492
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0113-T282-S-NI_000132 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788474
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0113-T282-S-NI_000121 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788463
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0113-T282-S-NI_000103 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788445
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0113-T282-S-NI_000099 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788441
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0113-T282-S-NI_000058 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788400
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0113-T282-S-NI_000047 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ788389
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0145-T222-S-NIPCRAMgANa_000164 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ800067
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0136-T365-S-NI_000253 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ794912
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0131-T346-S-NI_000215 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ793514
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
Uncultured organism clone ELU0131-T346-S-NI_000165 small subunit ribosomal RNA gene, partial sequence
Accession:
HQ793464
Identity : 100.0%
Coverage : 100.0%
QUERY: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATTCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGGTTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC