mock :: CA

Oligotype CA in "mock"

Page that explains diversity within an oligotype.

Unique Sequences Curve

» Abundance curve of unique sequences within CA, along with entropy values associated with these new set of alignments.

Distribution Among Samples

» Graphs below aim to give an idea about the distribution of unique sequences within CA among all samples.

This graph is here to remind the total number of reads for each sample that underwent the oligotyping analysis:

This graph shows the actual counts and distribution of unique sequences concealed within CA. By hovering over dots on the graph you can see the distribution of the first 20 sequences. If there are cases where the number of unique read #1 is competing with the number of other unique reads, it would mean that there is too much diversity trapped in this oligotype and needs to be decomposed by increasing the number of components. Sequences section below might help you decide which components might be appropriate to include.

This graph is similar to the one above, but normalized per sample by percent. Again, this should give you an idea about the concealed diversity.

Sequences

» First 20 Unique sequences

b CA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||

199798 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

491 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAGAGTTTGCGGCTCAACCGTAAAATTGC

479 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGGGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

473 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCGGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

459 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAGGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

452 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGGAAGTTTGCGGCTCAACCGTAAAATTGC

435 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAGATTGC

407 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGCGAAAGTTTGCGGCTCAACCGTAAAATTGC

404 CA b TACGGAGGATCCGAGCGTTGTCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

403 CA b TACGGGGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

403 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGCTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

393 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAGAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

382 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAGTTGC

353 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAGGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

352 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAGCCGTAAAATTGC

345 CA b TACGGAGGATCCGAGCGTTATCCGGGTTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

344 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTCGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

330 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTCGCGGCTCAACCGTAAAATTGC

329 CA b TGCGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

319 CA b TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCCCAACCGTAAAATTGC

BLAST Hits

» Alignments obtained for the most frequent sequence of CA are shown below.

Uncultured bacterium clone WWEB304 16S ribosomal RNA gene, partial sequence
Accession: KC304028
Identity : 100.0%
Coverage : 100.0%

QUERY: TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATATTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

Uncultured bacterium clone WWEB143 16S ribosomal RNA gene, partial sequence
Accession: KC303874
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone SCall-117 16S ribosomal RNA gene, partial sequence
Accession: KC302968
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 542CL31d 16S ribosomal RNA gene, partial sequence
Accession: KC302783
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 532CL31aa 16S ribosomal RNA gene, partial sequence
Accession: KC302774
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone UUF264 16S ribosomal RNA gene, partial sequence
Accession: KC245419
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone UUF148 16S ribosomal RNA gene, partial sequence
Accession: KC245303
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms251-2h10 16S ribosomal RNA gene, partial sequence
Accession: JF257144
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms251-1h10 16S ribosomal RNA gene, partial sequence
Accession: JF257068
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms251-1c10 16S ribosomal RNA gene, partial sequence
Accession: JF257013
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms250-3b04 16S ribosomal RNA gene, partial sequence
Accession: JF256919
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms250-1c07 16S ribosomal RNA gene, partial sequence
Accession: JF256771
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms250-1a04 16S ribosomal RNA gene, partial sequence
Accession: JF256753
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms248-1f08 16S ribosomal RNA gene, partial sequence
Accession: JF256381
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms248-1c05 16S ribosomal RNA gene, partial sequence
Accession: JF256349
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms248-1d04 16S ribosomal RNA gene, partial sequence >gi|323296591|gb|JF256361.1| Uncultured bacterium clone 16sms248-1d08 16S ribosomal RNA gene, partial sequence >gi|323296697|gb|JF256467.1| Uncultured bacterium clone 16sms248-3a09 16S ribosomal RNA gene, partial sequence >gi|323296706|gb|JF256476.1| Uncultured bacterium clone 16sms248-3b10 16S ribosomal RNA gene, partial sequence
Accession: JF256358
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms248-1a01 16S ribosomal RNA gene, partial sequence
Accession: JF256329
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms247-3b09 16S ribosomal RNA gene, partial sequence
Accession: JF256266
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms247-2f08 16S ribosomal RNA gene, partial sequence
Accession: JF256226
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone 16sms247-2c11 16S ribosomal RNA gene, partial sequence
Accession: JF256199
Identity : 100.0%
Coverage : 100.0%