mock :: GT

Oligotype GT in "mock"

Page that explains diversity within an oligotype.

Unique Sequences Curve

» Abundance curve of unique sequences within GT, along with entropy values associated with these new set of alignments.

Distribution Among Samples

» Graphs below aim to give an idea about the distribution of unique sequences within GT among all samples.

This graph is here to remind the total number of reads for each sample that underwent the oligotyping analysis:

This graph shows the actual counts and distribution of unique sequences concealed within GT. By hovering over dots on the graph you can see the distribution of the first 20 sequences. If there are cases where the number of unique read #1 is competing with the number of other unique reads, it would mean that there is too much diversity trapped in this oligotype and needs to be decomposed by increasing the number of components. Sequences section below might help you decide which components might be appropriate to include.

This graph is similar to the one above, but normalized per sample by percent. Again, this should give you an idea about the concealed diversity.

Sequences

» First 20 Unique sequences

b CA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||

135842 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

5270 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTTAACCTTAAAATTGC

438 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCGGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

343 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAGATTGC

340 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAGAGTTTGGGGCTCAACCTTAAAATTGC

306 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGGAAGTTTGGGGCTCAACCTTAAAATTGC

304 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGCTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

298 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGGGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

295 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGCTTGGGGCTCAACCTTAAAATTGC

290 GT b TACGGGGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

288 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAGGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

286 GT b TACGGAGGATGCGAGCGTTGTCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

276 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAGGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

265 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAGCCTTAAAATTGC

259 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGCGAAAGTTTGGGGCTCAACCTTAAAATTGC

255 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAGTTGC

253 GT b TACGGAGGATGCGAGCGTTATCCGGGTTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

248 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAGAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

216 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCCGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

215 GT b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCCCAACCTTAAAATTGC

BLAST Hits

» Alignments obtained for the most frequent sequence of GT are shown below.

Uncultured bacterium clone WB10 16S ribosomal RNA gene, partial sequence
Accession: KC737004
Identity : 100.0%
Coverage : 100.0%

QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTTTTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGC

Uncultured bacterium clone DSING001 16S ribosomal RNA gene, partial sequence
Accession: KC304745
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone ESING012 16S ribosomal RNA gene, partial sequence
Accession: KC304714
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone WWIB565 16S ribosomal RNA gene, partial sequence
Accession: KC304423
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone PWO668 16S ribosomal RNA gene, partial sequence
Accession: KC301412
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone PWO660 16S ribosomal RNA gene, partial sequence
Accession: KC301404
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone PWO272 16S ribosomal RNA gene, partial sequence
Accession: KC301057
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone PWO264 16S ribosomal RNA gene, partial sequence
Accession: KC301050
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone PWO067 16S ribosomal RNA gene, partial sequence
Accession: KC300876
Identity : 100.0%
Coverage : 100.0%

Uncultured organism clone ELU0102-T240-S-NI_000234 small subunit ribosomal RNA gene, partial sequence
Accession: HQ785053
Identity : 100.0%
Coverage : 100.0%

Uncultured organism clone ELU0102-T240-S-NI_000230 small subunit ribosomal RNA gene, partial sequence
Accession: HQ785049
Identity : 100.0%
Coverage : 100.0%

Uncultured organism clone ELU0102-T240-S-NI_000121 small subunit ribosomal RNA gene, partial sequence
Accession: HQ784940
Identity : 100.0%
Coverage : 100.0%

Uncultured organism clone ELU0102-T240-S-NI_000095 small subunit ribosomal RNA gene, partial sequence
Accession: HQ784914
Identity : 100.0%
Coverage : 100.0%

Uncultured organism clone ELU0102-T240-S-NI_000011 small subunit ribosomal RNA gene, partial sequence
Accession: HQ784830
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium gene for 16S ribosomal RNA, partial sequence, clone: D34
Accession: AB666147
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone VDRd28cont9 16S ribosomal RNA gene, partial sequence
Accession: JN021795
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone controlVDRday3588 16S ribosomal RNA gene, partial sequence
Accession: GU170980
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone controlVDRday3535 16S ribosomal RNA gene, partial sequence
Accession: GU170950
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone HFV03_139 16S ribosomal RNA gene, partial sequence
Accession: GU104410
Identity : 100.0%
Coverage : 100.0%

Uncultured bacterium clone HFV02_322 16S ribosomal RNA gene, partial sequence
Accession: GU103964
Identity : 100.0%
Coverage : 100.0%