Oligotype GC in "mock"
Page that explains diversity within an oligotype.
Unique Sequences Curve

» Abundance curve of unique sequences within GC, along with entropy values associated with these new set of alignments.

Distribution Among Samples

» Graphs below aim to give an idea about the distribution of unique sequences within GC among all samples.

This graph is here to remind the total number of reads for each sample that underwent the oligotyping analysis:

This graph shows the actual counts and distribution of unique sequences concealed within GC. By hovering over dots on the graph you can see the distribution of the first 20 sequences. If there are cases where the number of unique read #1 is competing with the number of other unique reads, it would mean that there is too much diversity trapped in this oligotype and needs to be decomposed by increasing the number of components. Sequences section below might help you decide which components might be appropriate to include.

This graph is similar to the one above, but normalized per sample by percent. Again, this should give you an idea about the concealed diversity.

Sequences

» First 20 Unique sequences

    b CA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||

127667   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

724   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCCACCGGGAAACTGC

626   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGACACTGC

368   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAACCTGC

352   GC b TACGGGGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

350   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTTAACCGGGAAACTGC

344   GC b TACGGAGGATGCGAGCGTTGTCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

292   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGGGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

283   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAGCTGC

259   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAGATTTTCCGGCTCAACCGGGAAACTGC

258   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGCTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

252   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCGGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

248   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAGACTGC

226   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGGAATTTTCCGGCTCAACCGGGAAACTGC

225   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAGGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

224   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAGGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

222   GC b TACGGAGGATGCGAGCGCTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

220   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCGGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

200   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAGAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

199   GC b TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGCGAAATTTTCCGGCTCAACCGGGAAACTGC

BLAST Hits

» Alignments obtained for the most frequent sequence of GC are shown below.

Uncultured bacterium clone BD08501 16S ribosomal RNA gene, partial sequence
Accession: JQ186910
Identity : 100.0%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

 

 

Uncultured bacterium clone BD13483 16S ribosomal RNA gene, partial sequence
Accession: JQ188433
Identity : 100.0%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

 

 

Uncultured bacterium clone 16slp70-01h04.p1k 16S ribosomal RNA gene, partial sequence
Accession: FJ508901
Identity : 100.0%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

 

 

Bacteroidaceae bacterium DJF_B220 16S ribosomal RNA gene, partial sequence
Accession: EU728720
Identity : 100.0%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

 

 

Uncultured bacterium clone FMFRc11_615 16S ribosomal RNA gene, partial sequence
Accession: EU531963
Identity : 100.0%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

 

 

Uncultured bacterium clone FMFRc11_608 16S ribosomal RNA gene, partial sequence
Accession: EU531962
Identity : 100.0%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

 

 

Uncultured bacterium clone SSH_48 16S ribosomal RNA gene, partial sequence
Accession: EU268850
Identity : 100.0%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

 

 

Uncultured bacterium clone F112bD08 16S ribosomal RNA gene, partial sequence
Accession: HM806523
Identity : 99.0%
Coverage : 97.0%

 
QUERY: GGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
SUBJE: GGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAGGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC

 

 

Uncultured bacterium clone GKJWQY101BVQAI 16S ribosomal RNA gene, partial sequence
Accession: JQ998895
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGATGTTAAGTCAGCTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

 

 

Uncultured Bacteroidales bacterium clone GKJWQY101BSAA6 16S ribosomal RNA gene, partial sequence
Accession: JQ997322
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGATGTTAAGTCAGCTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

 

 

Uncultured bacterium clone H11NY5c 16S ribosomal RNA gene, partial sequence
Accession: KC303741
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| ||| ||||||||||| |||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTCGTTAAGTCAGCTGTGAAAGTTTACGGCTCAACCGTGAAATTGC

 

 

Uncultured bacterium clone G01NY5c 16S ribosomal RNA gene, partial sequence
Accession: KC303652
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGATGTTAAGTCAGCTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

 

 

Uncultured bacterium clone D02NY4 16S ribosomal RNA gene, partial sequence
Accession: KC303461
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| ||| ||||||||||| |||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGACGGGTCGTTAAGTCAGCTGTGAAAGTTTACGGCTCAACCGTGAAATTGC

 

 

Uncultured bacterium clone PPGA494 16S ribosomal RNA gene, partial sequence
Accession: KC302180
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGATGTTAAGTCAGCTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

 

 

Uncultured bacterium clone PPGA458 16S ribosomal RNA gene, partial sequence
Accession: KC302144
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGATGTTAAGTCAGCTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

 

 

Uncultured bacterium clone PPGA441 16S ribosomal RNA gene, partial sequence
Accession: KC302128
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGATGTTAAGTCAGCTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

 

 

Uncultured bacterium clone PPGA302 16S ribosomal RNA gene, partial sequence
Accession: KC301990
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGATGTTAAGTCAGCTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

 

 

Uncultured Bacteroidales bacterium clone NECraneWater_1556 16S ribosomal RNA gene, partial sequence
Accession: KC149852
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||| ||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGTATTTTAAGTCAGCTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

 

 

Uncultured Bacteroidales bacterium clone NECraneWater_1517 16S ribosomal RNA gene, partial sequence
Accession: KC149843
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||| ||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGTATTTTAAGTCAGCTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

 

 

Uncultured Bacteroidales bacterium clone NECraneWater_1468 16S ribosomal RNA gene, partial sequence
Accession: KC149830
Identity : 93.1%
Coverage : 100.0%

 
QUERY: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGACTTTAAGTCAGCTGTGAAATTTTCCGGCTCAACCGGGAAACTGC
MATCH: ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||| ||| |||
SUBJE: TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGTATTTTAAGTCAGCTGTGAAAGTTTGCGGCTCAACCGTAAAATTGC

 

 

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