Browsing "Pipeline"

From QIIME to Oligotyping

From QIIME to Oligotyping

QIIME is one of the most widely-used pipelines among microbial ecologists to analyze their high-throughput sequencing data. The more people [...]

Oct 6, 2014     No Comments
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Oligotyping in VirtualBox

Oligotyping in VirtualBox

Çağrı Ulaş, a second year computer engineering undergrad from Canakkale Onsekiz Mart University, Turkey, created an Arch Linux-based VirtualBox image [...]

Sep 2, 2014     No Comments
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Installing the Oligotyping Pipeline

Installing the Oligotyping Pipeline

Installing the oligotyping pipeline on a MAC or a Linux computer is as easy as writing this command in the [...]

Aug 16, 2014     No Comments
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How to Oligotype: Best Practices

How to Oligotype: Best Practices

Oligotyping is a supervised method, which makes it a method that greets its users with a learning curve. To make [...]

Nov 4, 2013     No Comments
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Network Analysis of Human Oral Microbiome

Network Analysis of Human Oral Microbiome

Bar charts, pie charts, NMDS plots, dendrograms are all nice, but I like exploring new ways to visualize complex data. [...]

Mar 29, 2013     No Comments
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Basic Sample Mapping with Oligotyping

Basic Sample Mapping with Oligotyping

Oligotyping pipeline generates all necessary files the user may need to investigate the distribution of the recovered oligotypes among their [...]

Feb 4, 2013     No Comments
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Oligotyping Pipeline Explained

Oligotyping Pipeline Explained

This document is an attempt to explain software pipeline for oligotyping. Please do not hesitate to ask any questions you [...]

May 11, 2012     1 Comment
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